ECLIPSE - ECLIPSE: Enhanced CLonotypic Inference via Prediction of Single-cell Expression

This package is used for the analysis of single-cell T cell receptor sequencing data (scTCR-seq). ECLIPSE maps chain pairings across a sample to predict the true clonotype of each cell, unlike other methods which only consider the chains that are sequenced in each cell. Seurat objects and Cell Ranger vdj/multi contig files are required as inputs.